get gene annotation for nucleotide sequence of the NCBI RefSeq database

Question

[dabid]

I have fasta files of different genomes of bacteria taken from the NCBI RefSeq database. I want to get the annotation of these genomes as the ones that can be shown in the genbank file format. What I mean by annotation is cds (gene start/end positions, description, and others). Anyway, I want to extract cds (nucleotide sequence) that have title/description of prophages.

[h.mon]

Where did you download the fastas? Could you give an example? In general, you will find the annotation on the same folder you found the fastas.

[dabid]

As I mentioned, I downloaded these fasta files from NCBI (RefSeq database). I just to know that genbank files have such information. But don't know how to extract the genbank files specific to my downloaded fasta files

Answer 1

[dabid]

Maybe it is not an exact answer for my question, but as a turn around, what I needed doing is downloading the bacteria genomes that I need from the NCBI RefSeq database as a genbank files. Then, it's easy to process these genbank files using Biopython library to get CDs, etc.