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7.4 years ago
QVINTVS_FABIVS_MAXIMVS
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Say I have a read with three mappings (chimeric read)
ReadName Chrom LeftPosition RightPosition
READ1 1 10 20
READ1 1 40 50
READ1 3 20 40
Is it possible for me to order the mappings as it was sequenced? Would the CIGAR string be key in this case?
Like looking at soft/hard clips and measuring the size of the alignments?
what is that format ? what is " mappings as it was sequenced? " ?