Entering edit mode
13.9 years ago
Elena
▴
250
Dear Friends,
I ve found out the SNPs which are resposible for causing the disease. Now i ve to check whether these SNPs(which i ve found out through literature search) is present in my sequence or not.
for eg: rs6094752 is one of the SNP in the gene NCOA3 causing Breast cancer(which i ve found out through literature search)
and i have a reference sequence of human NM_001174087.
now i have to check whether rs6094752 is present in NM_001174087 or not? this is my question. How can i find it
Ya sir i ve got it. Thanku
Thanku Pierre. I ve got another doubt, if the same SNP i need to find in other organism?
like rs6094752 in XR_024896.1(Pan troglodytes)?
Thankyou Pierre for clearing my silly doubt. got one more doubt if i need to find out the same SNP i.e. rs6094752 in other primates like in XR_024896.1( Pan troglodytes)
See this question
I've checked the SNP in that particular reference sequence. for eg: rs6094752 in NM_001174087. and the result is
NM_001174087.1:c.652C>T
, but when i saw the residue number in the reference sequence, according to the result the residue should beT
, but instead ofT
,G
is present. How can I interpret the result? Kindly help