Map from GEO samples' name to TCGA name
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7.4 years ago
landscape95 ▴ 190

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data sets "GSE10810", "GSE10780", "GSE12276", "GSE19615", "GSE20711", "GSE21653", "GSE9195" on NCBI. Your help is really appreciated. Thank you!

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10810

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10780

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12276

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19615

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20711

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21653

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9195

mapping • 1.5k views
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Entering edit mode
7.4 years ago
Samuel Brady ▴ 330

Those GEO accessions are not necessarily TCGA samples and so may not have TCGA IDs.

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