Human in NCBI Genomes
1
0
Entering edit mode
7.4 years ago
int11ap1 ▴ 490

I want to download the human annotation from NCBI Genomes. Searching the term human in

https://www.ncbi.nlm.nih.gov/genome/

I redirects me into

https://www.ncbi.nlm.nih.gov/genome/?term=human

So, when I click to GFF in order to download the annotation, the downloaded file is way too small. What's going on? I found the same issue with the ftp:

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.26_GRCh38.p11/

Thank you.

human genome ncbi • 2.0k views
ADD COMMENT
0
Entering edit mode

the human genome

Fasta? GTF? Annotation? Sequence?

ADD REPLY
0
Entering edit mode

I said GFF in the post.

ADD REPLY
1
Entering edit mode
7.4 years ago
vmicrobio ▴ 290

you can get the information from here : http://genome.ucsc.edu/cgi-bin/hgTables

output format : GTF

then convert it to GFF

ADD COMMENT

Login before adding your answer.

Traffic: 2899 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6