Problem installing multibreak-SV

Question

[biomagician]

Hi,

I am trying to install multibreak-sv: https://github.com/raphael-group/multibreak-sv/blob/master/doc/MultiBreakSV-Manual.txt

I have tried the following:

    git clone https://github.com/raphael-group/multibreak-sv.git
    cd multibreak-sv
    ./install

Cloning into 'multibreak-sv'...
Removing previous builds
Installing MultiBreak-SV...
Buildfile: /Users/...../multibreak-sv/build.xml

clean:
   [delete] Deleting directory /Users/......./multibreak-sv/bin

init:
    [mkdir] Created dir: /Users/....t/multibreak-sv/build
    [mkdir] Created dir: /Users/......t/multibreak-sv/lib
    [mkdir] Created dir: /Users/...../multibreak-sv/bin

compileMBSV:
    [javac] Compiling 11 source files to /Users/..../multibreak-sv/build
     [exec] Traceback (most recent call last):
     [exec]   File "setup.py", line 5, in <module>
     [exec]     from Cython.Build import cythonize
     [exec] ImportError: No module named Cython.Build
Command to add lib/ directory to your PATH and PYTHONPATH environment variables.
execute this in the terminal or add to you ~/.bashrc file.

export PATH=$PATH:/Users/......t/multibreak-sv/lib/
export PYTHONPATH=$PYTHONPATH:/Users/......../multibreak-sv/lib/

Installation complete.  Check for errors.

BUILD FAILED
/Users/........./multibreak-sv/build.xml:37: exec returned: 1

Total time: 1 second

I realise that there must be something wrong with Cython.Build, but I don't know what.

Thanks for your help.

Best,

C.

Answer 1

[loonreg]

If it's the issue of Cython, you can type pip install cython to install it. Also, please make sure that you've installed numpy. If not, you can install it by the command pip install numpy