how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analysis

Question

[reza]

hi everyone

i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis by DAVID. how can i do it and how can i rank genes containing most non-synonymous snps.

thanks in advance

[Pierre Lindenbaum]

how is this different from your previous question ? Functional annotation of SNPs and genes containing nonsynonymous SNPs