Downstream applications of Differential transcript expression

Question

[firestar]

I am looking for examples of possible downstream applications/methods for Differential transcript expression. For genes, I would go for enrichment analysis, GO analysis, pathway analysis etc.

I have a list of differentially expressed transcripts. What then?

Answer 1

[theobroma22]

SPIA: Signalling Pathway Impact Analysis

Answer 2

[h.mon]

See these BioConductor Workflows:

https://www.bioconductor.org/help/workflows/RNAseq123/

https://www.bioconductor.org/help/workflows/RnaSeqGeneEdgeRQL/

Answer 3

[EagleEye]

GeneSCF