Plot: Abundance at telomer region

Question

[popayekid55]

Hi all,

are there any tool or R packages to generate this image. Depth at each position can be obtained from mpileup. How to add the gene track for each chromosme. Hope gviz does that. Any suggestions

[WouterDeCoster]

I think karyoploteR: uncircle your genomes is in the right direction for what you want.

[popayekid55]

thank you. will go through how it works