Working Human siRNA database?

1

Entering edit mode

7.3 years ago

popayekid55 ▴ 110

are there any working human siRNA (small interfering) databases from which sequences can be downloaded? most of them are not working. few i checked from here

database siRNA • 2.1k views

ADD COMMENT • link 7.3 years ago by popayekid55 ▴ 110

0

Entering edit mode

What do you mean by working ? Sequences of all siRNAs in the Mitocheck database are available.

ADD REPLY • link 7.3 years ago by Jean-Karim Heriche 27k

0

Entering edit mode

working as in db links being active. Most of the database links are not available. How can i download the siRNA sequences from mitocheck?

ADD REPLY • link 7.3 years ago by popayekid55 ▴ 110

0

Entering edit mode

mysql -h www.mitocheck.org -u anonymous -p mitocheck2_1 -e 'select external_ID, seq_oligo1, seq_oligo2 from oligo_pair' > mitocheck_siRNA_sequences.txt

seq_oligo2 is the guide strand of the siRNA and seq_oligo1 is the passenger strand.

ADD REPLY • link 7.3 years ago by Jean-Karim Heriche 27k

0

Entering edit mode

RNA Central has a ton of siRNA but no human ones. Any idea why that is so?

ADD REPLY • link 7.3 years ago by GenoMax 147k

0

Entering edit mode

My guess is that RNA central is only concerned with genome-encoded RNAs.

ADD REPLY • link 7.3 years ago by Jean-Karim Heriche 27k

Login before adding your answer.