Entering edit mode
7.3 years ago
me
▴
10
When generating secondary analysis data from PacBio sequencing, you can use the SMRT View with your data, but the visual representation does not seem intuitive/friendly to me.
- How does one look at the variants table in a resequencing job?
- How can you determine an obvious, big indel when variants doesn't reflect an obvious say 1Kb deletion?
- What type of quality measure is the QV (apart from it being "four different per-base Quality Values")? Better yet, what's a good quality cutoff?
- Any other visualization programs out there that will display PacBio analysis data?
Off-topic question...
- What's a typical good coverage cutoff, 30x or 50x?
Have you looked at the manual? Not many on here are going to have access to SMRT view.