Question

Segmentation fault error with hera

1

Entering edit mode

7.3 years ago

P ▴ 10

Hi,

I get an error while running hera, any thoughts?

/var/spool/pbs/mom_priv/jobs/783682.pbs02.SC: line 11: 117890 Segmentation fault      /hera/build/hera quant -i /Controls_CG_samples/hera/index /Controls_CG_samples/cms_R1_001.fastq /Controls_CG_samples/cms_R2_001.fastq -o /Controls_CG_samples/hera_output -t 16

I am running by hera configure 2.0, on a pbs cluster system with x86_64-redhat-linux.

Thanks for your help,
Rini

hera rna-seq • 1.9k views

ADD COMMENT • link updated 17 months ago by Ram 44k • written 7.3 years ago by P ▴ 10

0

Entering edit mode

Include information about your OS, where and how you obtained hera and the version you are running. That generally helps developers debug issues.

ADD REPLY • link 7.3 years ago by GenoMax 147k

0

Entering edit mode

Thanks! Added. Rini

ADD REPLY • link 7.3 years ago by P ▴ 10

score 2 · Answer 1 · 2017-08-04

2

Entering edit mode

7.3 years ago

sonpham ▴ 580

Thanks Rini for the bug report. Please pull the new code from GitHub and rebuild hera. We identified the bug and have fixed it. Please let us know if it resolves the problem!

BioTuring Algorithm Team

ADD COMMENT • link 7.3 years ago by sonpham ▴ 580