SnpEff html and .vcf file result are not matching
0
1
Entering edit mode
8.3 years ago

Dear All,

I have successfully managed to run SnpEff for my vcf files. However, the count of missense variants in my html file and the VCF file generated by SnpEff are different.

Missense in HTML: 205,104 Missense in VCF fle: 190,605

Can any one please suggest me about the criteria for missense calculation in html file, so that I could match the vcf file with the missense file.

My SnpEff version is: 4.1 Genome used: rice7 Command Line: snpEff ann -V rice7 [input_file]
snp • 2.1k views
ADD COMMENT •
0
Entering edit mode

Hy i am also have same problem, can any one please suggest me about this error

ADD REPLY •
0
Entering edit mode

Hy i am also have same problem, can any one please suggest me about this error

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 1886 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6