Entering edit mode
7.3 years ago
pacman
▴
70
I am comparing various clustering methods for scRNA-seq data. Does it make sense to show SNN-Cliq clustering result on a 2D tSNE plot? I am asking because one of the methods I am testing is kmean clustering of the PCA (which then use tSNE for visualization). A direct comparison between those two method on the same plot would be quite nice.