scRNA-seq: how to visualize SNN-Cliq clustering result
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7.3 years ago
pacman ▴ 70

I am comparing various clustering methods for scRNA-seq data. Does it make sense to show SNN-Cliq clustering result on a 2D tSNE plot? I am asking because one of the methods I am testing is kmean clustering of the PCA (which then use tSNE for visualization). A direct comparison between those two method on the same plot would be quite nice.

scRNAseq single-cell SNN Snn-cliq tsne • 2.3k views
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