Entering edit mode
7.4 years ago
maoyunuo
•
0
i met some problems when installing the packages"cummeRbund",
library(cummeRbund) and it went like
The following object is masked from 'package:GenomicRanges':
promoters
The following object is masked from 'package:IRanges':
promoters
The following object is masked from 'package:BiocGenerics':
conditions
i wanted to check the cummeRbund whether it run correctly, so i typed
cuff <- readCufflinks(dir=system.file("extdata", package="cummeRbund"))
it went like
Creating database C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/cuffData.db
Reading Run Info File C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/run.info
Writing runInfo Table
Reading Read Group Info C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/read_groups.info
Writing replicates Table
Reading C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/genes.fpkm_tracking
Checking samples table...
Populating samples table...
Error: Column name mismatch.
In addition: There were 50 or more warnings (use warnings() to see the first 50)
i don't know how to solve this. Thanks
Here some discussion about this bug link