Inserting k-mers into existing Graph with GATB

Question

[TK]

Hi,

I was wondering if it is possible to insert further k-mers into an existing de Bruijn Graph with GATB-core? I'd like to add another sequence into a graph by iterating over the k-mers and add them to an existing graph. Is such a functionality realized yet? If so, can one re-trigger the tip/bulge removal?

Best, TK

Answer 1

[pierre.peterlongo]

Hi there,

This functionality is not realized and not adapted to the minia data structure, designed to the indexation of a fixed kmer set.