chipseq, how to create the density plot with real length of gene

Question

[maryamforoozani16]

Hi , I am working on H3K4me3. I am trying to create the real length representation of the profile of this histone modification in my data. I used Ngsplot software to draw density plot on the metagene. but now I am looking for plotting the data in real length of the genes. some plot similar to these in this paper.

I was wondering if there is software to use for this purpose. Thanks Maryam

[Lila M]

Just for me to be sure, do you want to plot the transcript length right? If this is the case, you can create a bed file with the transcripts associated with your genes and then plot it using computeMatrix tool, for example.

Answer 1

[ghostforever.shi]

Maybe you can try Ngsplot, which is quite useful.