Get sequences from oligonucleotide probe ids
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7.3 years ago
The Last Word ▴ 230

Hi,

I have a bunch of oligonucleotide probe ids (please click on link). Now I need to retrieve the sequences for these probes to the new honey bee gene-set. Could you please suggest a method I could use to retrieve the sequences for these probes because I can't seem to find it anywhere.

sequence • 1.6k views
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7.3 years ago
GenoMax 147k

Sequences of the oligo probes are available in this file from GEO.

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7.3 years ago
Niek De Klein ★ 2.6k

The second column is an NCBI nucleotide ID, you can search the nucleotide database for the sequence. For example: https://www.ncbi.nlm.nih.gov/gquery/?term=XM_001122142.1

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