GATB-minia-pipelne fails at bloocoo step

Question

[Shyam]

Hi: I am tryin g to install GATB-minia pipeline and the make went smoothly. When I run the test it fails at the bloocoo step with error

Exception:[Errno 2] No such file or directory

Evrything is as is with the git directory. I didn't change anything. /test folder is intact.
Can anyone help with this.
Thank you
G

[Shyam]

Its working now. I replaced the default bloocoo executable with the one I compile from the source and it is working now. Did the same for the minia too.

Answer 1

[Rayan Chikhi]

Glad you were able to solve it. Note also that it is possible to run gatb-minia-pipeline without bloocoo, using the --no-error-correction flag. If you have any other issues, please let us know.