How to make a nice mutation overview figure like this?

Question

[Floris Brenk]

Hi all,

Does anyone know how to make a nice mutation overview figure like this nice figure? I found a similar way to make these plots with GenVisR But was curious whether there are also other packages out there?

Thanks Floris

[cpad0112]

outside R: http://www.cbioportal.org/mutation_mapper.jsp in R, trackviewer

[Floris Brenk]

Also very nice thanks!

[zx8754]

How To Create Mutation Diagram In R Or In Any Tools?

Answer 1

[Floris Brenk]

In the end I think this is the easiest way -> Lollipops

Answer 2

[Ibrahim Tanyalcin]

Hi Floris.

I worked on a similar project some years ago. Does this sort of representation work for you? You can see some other examples at this post as well. There is also the github repository in case you want to take a look at the project files before you download anything. This is not in R though, its in javascript.

[Floris Brenk]

Looks very pretty and interesting thanks! I only have ~50 mutations per gene so I think the circos plot is a bit too complicated to show for those genes...