Download list of all genes of genome build GRCh38.p0

Question

[akij]

I need to download the list of all genes with their location of genome build GRCh38.p0. Is there any API for this? I just need the gene names and their location something like this

gene name   chromosome  start  end
  ZNF331        19:53569378-53577953

[Denise CS]

As you are interested in ALL genes, how about trying to download the GTF from the Ensembl FTP release 76, the first with GRCh38?

[akij]

Hi! Thanks a lot. Is there any API where I can input chromosome regions like 19:53569378-53577953 and get a list of Genes within this region for genome build GRCh38.p0?

[GenoMax]

Ensembl REST API.

[Arup Ghosh]

Use bioMart or UCSC TableBrowser.

https://genome.ucsc.edu/cgi-bin/hgTables

Answer 1

[aka001]

You can use Ensembl BioMart to do that.

[akij]

Could you explain how? I don't see the build version I mentioned there

[GenoMax]

Patches are unlikely to cause major changes in gene information so you should be able to use the current GRCh38 build.