How to find target genes of long non coding RNA

Question

[bk11]

Hi, I am new to long non coding RNA data analysis. How can I predict/identify target genes of long non coding? Is there any code available for this study?

Answer 1

[lsp03yjh]

You can use starBase to discover lncRNA-miRNA and lncRNA-RBP interactions.

[bk11]

How can bedtools be used for this propose? Is there any bash scripts available? I want to identify the co-expressed genes around 5-10 kb up/downstream of differentially expressed long non coding RNA.