How to find expression data-set derive from RNA-Seq experiments

Question

[lmanohara99]

Where can I find open access expression data-sets derive from RNA-Seq experiments?

[Michael]

This is very broad, what do you need exactly? expression data set could mean a lot of things:

• assembled transcripts
• gene or transcript counts
• alternative splicing data
• normalized data ...

[lmanohara99]

Specially I am searching expressions such as disease or nondisease, mutation or non-mutation.

[lmanohara99]

Hi Michael, Can you help me to find a data-set?

[Michael]

What do you want to do with the data, I am guessing you want to learn how to run some pipelines/tools on them, and the data need to be from which species?

[lmanohara99]

Yeah, that will be my next step. First I need to understand the data structure and what parameters are included. I am searching data set related to homo-sapience.

Answer 1

[Jake Warner]

1. NCBI Short Read Archive : Raw sequencing reads from many, many, projects.

2. The Cancer Genome Stlas : Cancer transcriptomic data.

3. Recount : Count tables from human studies.

4. Most publications make their data available.

[lmanohara99]

Thank you for the information.