Entering edit mode
7.2 years ago
Anand Rao
▴
640
Does anyone on the forum here have experience successfully using ErrorCorrectReads.pl of ALLPATHS-LG for error correction of Illumina reads. I have PE 2*150bp HiSeq 4000 data.
But with 2 different versions - 44837, and 52488, I am receiving this same error:
Use of uninitialized value $args{"_extra"} in concatenation (.) or string at /share/apps/allpathslg-44837/bin/ErrorCorrectReads.pl line 291.
The run does not terminate right away. This may appear cross posted with ALLPATHS-LG error correction step problem, but I am changing my question here so there are technical replies that can help overcome my technical problems. THANKS!
