Most places online suggest using the Walrus + Phylo3D tools for analysis and visualization of 3D phylogenetic trees. Walrus is still available and working, but Phylo3D has gone missing as of version 1.2.
Does anyone have a copy of this software you could share? Thanks so much.
Here's the article on Walrus/Phylo3D: http://www.biomedcentral.com/1471-2105/5/48
Did you try contacting the author?
Yes. The main author did not respond, but the others (including their adviser) did. Very nice folks. Unfortunately they lost their copy in a hard drive failure.