Convert SBML to .sif for Cytoscape

Question

[jolespin]

I have an SBML L2 V4 file (http://www.ebi.ac.uk/biomodels-main/BMID000000140371) and I want to convert it into .SIF for Cytoscape. I imported it into Cytoscape but I wasn't able to convert it from there. Does anyone know of a reliable tool I could use for this? Command line options are fine as well as GUIs.

[piet.amc]

Hi, you should be able to simply export the network as .sif file. File>Export>Network opens the appropriate dialog. Hope this helps, Piet

Answer 1

[mhucka]

Unfortunately, I don't believe there is a converter that will generate .SIF files at this time. However, a plug-in for Cytoscape is available to read SBML files. It is called CySBML. Perhaps this will be sufficient for your needs?