Entering edit mode
7.2 years ago
hodatn
•
0
Hi Friends, I have a DEGs list of one medicinal plant which does not have the whole genome sequences.(just has RNA-seq data) I found the TFs but because the whole genome sequence is not available :
Is it possible to find TFBS's sequences from RNA seq data and DEGs list?and how? Is there any database or software to find gene promoter sequences?
Thank you
The deferentially expressed genes(DEGs) was determined with a log-fold expression change(logFC) 2.
i mean without knowing the sequence, how do you align your reads and get the counts?