Is it possible to get genes' promoters' sequences with RNA-seq data?
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7.2 years ago
hodatn • 0

Hi Friends, I have a DEGs list of one medicinal plant which does not have the whole genome sequences.(just has RNA-seq data) I found the TFs but because the whole genome sequence is not available :

Is it possible to find TFBS's sequences from RNA seq data and DEGs list?and how? Is there any database or software to find gene promoter sequences?

Thank you

RNA-Seq promoter sequence TFs • 2.3k views
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7.2 years ago
shoujun.gu ▴ 380

How do you get the DEGs list?

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The deferentially expressed genes(DEGs) was determined with a log-fold expression change(logFC) 2.

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i mean without knowing the sequence, how do you align your reads and get the counts?

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