Breakdancer : samtools pid process 7845 is still there... invoking kill -9 on 7845 ... Closing samtools process : 7845

Question

[johnnytam100]

My command :

../../script/breakdancer-test-compile/lib/breakdancer-max1.4.5-unstable-66-4e44b43/bam2cfg.pl libextract-TTN_1aTTN_mapped_read_aln.sorted.bam

This error appeared :

> Processing bam: libextract-TTN_1aTTN_mapped_read_aln.sorted.bam
> Closing BAM file 
> Send TERM signal for 7845 
> samtools pid process 7845 is still there... 
> invoking kill -9 on 7845 ...  
> Closing samtools process : 7845

No any output files were found.

Any experience on this?

Thank you!

[Dr N Ch]

Hi... How is the issue resolved.... even i am stuck here.