Meandp In Vcftools

Question

[Yuliu]

Could someone help me to understand what is the meaning of following options for vcftools? how to choose the values for them when selecting sites?

--minQ --min-meanDP --maf --hwe --geno

I am quite new in this filed, thanks a lot for helping!

[Thaman]

Mailing Lists for vcftools - http://sourceforge.net/mail/?group_id=279407 , please consult with them

Answer 1

[Istvan Albert]

Please consult the vcftools documentation located at:

http://vcftools.sourceforge.net/options.html

[Yuliu]

not enough info there.

[Thaman]

Istan means to consult the developer@ [e-mail].