Differential ChIP-seq analysis

Question

[nvucic]

Hello everyone,

I am interested in differential ChIP-seq analysis. Does anyone know some real validated datasets that are publicly for this kind of analysis?

Best regards, Nemanja

Answer 1

[jared.andrews07]

ENCODE has thousands of ChIP-seq samples, including cell lines treated with various compounds and untreated lines. Those are very good sets to play with to get the hang of the things.

If you want a more concrete set, you can try the small set from the DiffBind package vignette.