Downloading annotation file for human transcriptome

Question

[KVC_bioinfo]

Hello,

I have downloaded human transcriptome(RefSeq Transcripts) from THIS link. I want to annotation file for same which I can use in STAR aligner. Can someone direct me from where I can download the annotation file?

Thank you in advance

[Satyajeet Khare]

The sequence in fasta and annotation in gff3 format is right there on the same page. You can download these two file (for the same version) and get started.

[KVC_bioinfo]

I can not see it on the same page there.

Answer 1

[Satyajeet Khare]

You can also try other repositories such as Gencode to download gene gtf and genome fasta files. Hope this works.

[KVC_bioinfo]

Thank you very much. However, on the page, you suggested I could not find GTF for Human transcriptome.

[Kevin Blighe]

GTF, GFF3, and FASTA files are right there on the GENCODE downloads pag: https://www.gencodegenes.org/releases/current.html