sleuth differential expression without bootstrap
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7.2 years ago
Pappu ★ 2.1k

I was trying to run sleuth for differential expression analysis. But I don't have the kallisto bootstrap values. I am wondering if it can run without bootstrap estimates.

RNA-Seq • 2.6k views
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If you have no bootstraps I'm pretty sure you can't prep the quantification for Sleuth. I had this issue when trying to run Salmon converted estimates (no bootstraps) in Sleuth and it threw an error.

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