R package to plot mutational frequency

Question

[U]

Does anyone know the R or python package used to produce an image as given below. I would like to plot tumor frequency models. Thanks

Mutational burden plot

Answer 1

[Mike]

Have a look at following packages...

GenVisR (parameter mutBurden)

https://bioconductor.org/packages/devel/bioc/vignettes/GenVisR/inst/doc/GenVisR_intro.html

maftools

https://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html

How to create a mutation landscape (waterfall) plot with GenVisR

Answer 2

[igor]

I don't know if there is a package for that, but you can use ggplot geom_jitter to do something similar. It's not the same, but it will let you see the distribution of the individual values.