Different binding pockets from softwares

Question

[Janeeta Raja]

I used two sotwares Autodock Vina and Patchdock for blind docking. Both gives different binding pockets and interacting residues for same ligand and receptor. Even on repeating the result is same. Which software result should I consider to be accurate?

[Janeeta Raja]

New versions are not freely available.

[Bioaln]

Not the AutoDock, a different docking software.

Answer 1

[Bioaln]

Autodock is severely outdated, use the most recent one.