Why Blastp have a minimum word size of 2?
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7.2 years ago

I don't understand why blast must have a minimum word size two? while this may works for longer sequences and make larger database search more computational feasible, some short sequences actually may not have two consecutive similar a.a.

blast • 962 views
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Entering edit mode
7.2 years ago
fishgolden ▴ 520

I think it's because BLAST is expected to be applied to

longer sequences

larger database search

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