Any coexpression tools for RNAseq expression data

Question

[kanika.arora.2089]

I have RNA seq differential expression data for which I want to generate coexpression network. I have fold changes for RNA seq data and I want to generate the coexpression network in minimal time.

Answer 1

[andrew.j.skelton73]

Here's a list of tools that perform Co-Expression analysis. Note that you're unlikely to be able to do this from a differential expression table alone. Popular tools such as WGCNA require normalised expression data and at least 20 samples for results to be meaningful.

[Arindam Ghosh]

A bit of clarification. While doing WGCNA or any other co-expression network, do we have to use the expression values for both the conditions of only a single condition?