Cufflinks installation error

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7.1 years ago

saj98 ▴ 140

Hello everyone

I am trying to install cufflinks using the following

/Downloads/cufflinks-2.2.1.Linux_x86_64$ configure --prefix=/usr/bin/to/cufflinks/install --with-boost=/usr/bin/to/boo

it run well then it gave me the following error

FAILED.  You must supply an HTSlib in order to build samtools successfully.

Any help or suggestion.

Thanks for your time

RNA-Seq software error • 1.9k views

ADD COMMENT • link updated 7.1 years ago by Ram 44k • written 7.1 years ago by saj98 ▴ 140

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Does the samtools directory contain the HTSlib? Where did you download samtools from?

ADD REPLY • link 7.1 years ago by ATpoint 85k

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I install it from the source https://github.com/samtools/samtools/blob/master/INSTALL

ADD REPLY • link 7.1 years ago by saj98 ▴ 140

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Recompile it from the tar.bz2 archive, which includes HTSlib. The other source code releases are incomplete:

The samtools-1.6.tar.bz2 download is the full source code release. The “Source code” downloads are generated by GitHub and are incomplete as they don't bundle HTSlib and are missing some generated files.

ADD REPLY • link 7.1 years ago by ATpoint 85k

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