How to get coordinates from HGVSc, HGVSp and gene name

Question

[Korsocius]

Dear all, I have table with 3 columns (tab separated). HGVSc, HGVSp, GENE NAME. I need to get coordinates for this rows. Which database I need to download via ftp, to join it together and get what I want please? Thank you

[finswimmer]

Hello,

whatever program you use to solve your task, be aware that the combination HGVS/Gene without a transcript could be ambiguous .

fin swimmer

[cpad0112]

Please post few examples here.

Answer 1

[Emily]

You could put the HGVSc notation into the Ensembl VEP.

[Korsocius]

Right, thank you...I forgot I have local installation of ensembl on my PC, but I have to actualize it. So I could use some Querry. Thank you so much.