' The cancer type is not available for this platform.' error using tcgaR package to download DNA methylation data
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7.1 years ago

I'm trying to use tcgaR package to download methyaltion data from TCGA. Unfortunately every time I use the getTCGA() function it throws this error:

Error in .getTCGA.meth(cancer = cancer, platform = platform, verbose = verbose, : The cancer type is not available for this platform.

I checked the package documentation and all the instructions seemed straight forward and I didn't find anyway to fix this problem. Can anyone help me fixing this problem, please?

methylation minfi tcgaR TCGA • 1.4k views
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7.1 years ago

I've just found that the package is deprecated!.

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