WGS data for healthy human women sequenced on Illumina HiSeq 2000?

Question

[Biomonika (Noolean)]

I need to download WGS for healthy women, ideally sequenced on Illumina HiSeq 2000. I intitially looked into 1000G data (http://www.internationalgenome.org/data/), but it doesn't seem to specify which machine was used for sequencing. I am interested in low complexity sequences and thus worried the machine type could make a difference to my downstream analysis.

Thank you.

[Chris Miller]

Large chunks of the TCGA cohorts would have been sequenced on the 2000, and I think that information will be obtainable, buried deep in the metadata somewhere.

Answer 1

[ATpoint]

How about some of the CEPH pedigree 1463 data (Hiseq2000, 50x). For these, you should also find plenty of validated variant calls if you search around.

[Biomonika (Noolean)]

Thank you, this is exactly what I was looking for.