Hi, I am trying to generate a gtf file using the txt gene annotation file of a virus genome and getting this message. This command line worked perfectly with hg19 or hg38 txt files...So I really don't know what I am doing wrong here.
$ cut -f2-11 XGenome.txt|genePredToGtf file stdin XGenome.gtf
"Expecting at least 10 words line 2 of stdin got 1"
What are the first few lines of XGenome.txt?