Question

HISAT2-2.0.1 is not installed

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7.1 years ago

XBria ▴ 90

Hi,

I am trying to perform mapping by Hisat2 in Ubuntu 17.04 on virtual Box, the installation process was :

downloading and unpacking and copying the .py and hisat to HOME/bin

the message appears: The program 'hisat2' is currently not installed. You can install it by typing: sudo apt install hisat2

I am gonna install the older version of hisat2 which is Hisat2-2.0.1.

Any tips ?

Hisat2 • 2.6k views

ADD COMMENT • link updated 7.1 years ago by Sej Modha 5.3k • written 7.1 years ago by XBria ▴ 90

score 1 · Accepted Answer · 2017-11-01

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7.1 years ago

Sej Modha 5.3k

If pre-built executables were downloaded from the website, you need to copy all the executables in your local bin.

ADD COMMENT • link 7.1 years ago by Sej Modha 5.3k

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yep ! I have already done !

ADD REPLY • link 7.1 years ago by XBria ▴ 90

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Did you copy all executables to the bin folder? Does $HOME/bin exists in the $PATH? You can try running which hisat2 to ensure that hisat2 exec are available in the current bash window.

ADD REPLY • link 7.1 years ago by Sej Modha 5.3k

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^ Probably means that OP jumped the gun, posted this question, figured out the problem and now original problem is no longer valid.

ADD REPLY • link 7.1 years ago by GenoMax 148k

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Dear Sej Modha, Thanksss alot, I had copied incomplete set of files. Checked and added the rest. :)

Again thanks !

ADD REPLY • link 7.1 years ago by XBria ▴ 90

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Please accept the answer if it resolved the problem.

ADD REPLY • link 7.1 years ago by Sej Modha 5.3k