Pathways visualization for GSEA table input in ClusterProfiler package of Bioconductor

Question

[lavanya.kannan]

ClusterProfiler package: Can I coerce an already generated GSEA results table as a enrichResults object and use it for visualization?

[emilie.derisoud]

Hello More than 2 years after, is the answer still available ? Are you working on a function :D I have data already analyzed with GSEA results and I really want to use enrichplot to do my graphs. I think it's pity I can't use enrichplot to represent my data.

Thank you

Emilie

Answer 1

[Guangchuang Yu]

clusterProfiler supports GSEA analysis and do provide several visualization methods for GSEA results.

If you want to coerce results from other software, there is not such conversion utilities provided.