Looking for wig base coverage file for hg19
1
2
Entering edit mode
7.7 years ago
Titus ▴ 910

Hi ,

I am trying to use EXCAVATOR to call CNV on my sample. To do that it's write in the documentation that i need this file http://grimmond.imb.uq.edu.au/uniqueome/downloads/hg19_uniqueome.coverage.base-space.25.1.Wig.gz . It's looks like unavailable do you know an other address where i could get it ? Or is there a way to generate it from hg19 fasta and a software ?

Best

software error • 2.7k views
ADD COMMENT
0
Entering edit mode
ADD COMMENT
0
Entering edit mode

This link doesn't work too.

ADD REPLY
0
Entering edit mode

Must be some local restriction in your case. It does lead to a page with files.

ADD REPLY
0
Entering edit mode

Ok i will try from home but when i click on the link i got : The requested URL /uniqueome/downloads/hg19_uniqueome.coverage.base-space.25.1.Wig.gz was not found on this server.

ADD REPLY
0
Entering edit mode

You are getting the right message. That file (though listed on the page @James linked to) does appear to be missing. In fact even though the page has many files listed only a couple at the very top seem to work.

ADD REPLY
0
Entering edit mode

Thanks , i hope this file will back ... I'm really confused i tried to use 2 CNV caller today , CoNIFER doesn't work i think because of some python 2.7 library not available (i think since python 3 ) and EXCAVATOR because of this file ....

ADD REPLY
1
Entering edit mode

Did you get the file? please share the link if you get it.

ADD REPLY
0
Entering edit mode

I didn't get it but i didn't try for a month ....

ADD REPLY
0
Entering edit mode

Hi Titus,

Have you got a chance to download the h19 wig file? or Do you know any links where I can download it?

ADD REPLY
1
Entering edit mode

Excavator2_v1.1.2 provides ucsc.hg19.bw file, I think you can use ucsc's bigWigToWig utility to convert. I am not sure whether it is a good choice.

ADD REPLY

Login before adding your answer.

Traffic: 2558 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6