Possible evolutionary studies using whole genome and RNA-seq data

Question

[MAPK]

Hi All, I have created this post to explore all the possible studies one could carry out with whole genome and RNA seq data for an organism. Could you please list all the possible studies we can carry out if we have (from a single organism):

1. Whole genome data 
2. RNA-seq data
3. Both Whole genome and RNA-seq data

Thanks, MAPK

[Mehmet]

Hi, Good suggestion. Thank you.

1. Phylogenomics based on ortholog proteins from genome and/or transcriptome data. 2.Gene family evolution (insertions/deletions, expansion of gene families) from genome and/or transcriptome data.