Ideas to improve the New Tuxedo

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7.0 years ago

XBria ▴ 90

Hi,

I am working on Rna seq data analysis protocol called New Tuxedo. I am writing this for those who have insights into this paper.

Any one has any suggestion to get the article pipeline improved? Or at least which methods do you suggest to work with in order to observe any improvements ( of course the results of the work do not matter to be improved, the hypothesis matters though.

Any single advice would be appreciated !

cheers,

RNA-Seq • 1.3k views

ADD COMMENT • link 7.0 years ago by XBria ▴ 90

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Maybe consider comparing the speed and accuracy of aligners like bwa and bowtie2

ADD REPLY • link 7.0 years ago by Hussain Ather ▴ 990

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It is not accepted by my instructor. That should contain an improvement !

ADD REPLY • link 7.0 years ago by XBria ▴ 90

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Is the new tuxedo pipeline reliable to work with?

ADD REPLY • link 6.6 years ago by Arindam Ghosh ▴ 530

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