Batch retrival of fasta sequences based on pfam (interpro) identifier

Question

[rzaja]

Hi,

i have dozens of pfam identifiers. I want to get all protein sequences (fasta) containing specific domain (pfam identifier). I know how to do it one by one but is there a way to do it all at once in batch? Thanks a lot for your help! Best

Answer 1

[BioinfGuru]

Read this post and try NCBI Batch Entrez or biomaRt or possibly bioperl EUtilities