Stringtie output for DGE
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7.0 years ago
amy16 ▴ 40

I've coverage tables generated with StringTie using only the -B option. Can this be used as an input for Ballgown for DGE? PS: I haven't used the -e option.
stringtie ballgown • 1.5k views
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-B option is to output for downstream ballgown analysis. Look at your output. If the output from StringTie resulted in .ctab files, then, i guess, you are good to go.

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Yes, I have the ctab files as the output. So does the option -e mean only for transcript annotated in the reference genome?

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