Error with ecolik12 enrichGO
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7.0 years ago

Hi I am new to clusterprofiler and R. I have read the vignette also. I could use the groupGO easily on the set of genes but enrichGO throws an error saying "Error in enrichGO(gene = cephalexinlist, organism = "ecolik12", ont = "BP", : unused argument (organism = "ecolik12")". The script is below.

What am I doing wrong here? Please any help will be appreciated. Many thanks in advance.

library(clusterProfiler)

list<-c("947767", "947672", "947507", "945554", "946343", "945972", "945947", "946526", "944968", "948848", "948661", "945059", "948650", "946185", "947449", "948698", "945278", "947095", "948665", "945957", "947019", "946107", "946243", "944797", "946677", "948666", "946053", "948150", "947189", "948566") enrichedgo <- enrichGO(list, organism="ecolik12", ont = "BP", pvalueCutoff = 0.05, readable = TRUE)

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Entering edit mode
7.0 years ago
Guangchuang Yu ★ 2.6k

answer here. pls don't create duplicated posts.

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